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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs2275426 1 rs4660898 chr1:46402171 MUTYH chr1:45794915-45806142:- 0.3 8.13 3.66E-15 Body mass index
THCA cis rs2275426 1 rs4660910 chr1:46548402 CCDC163P chr1:45960581-45965646:- -0.52 -10.17 4.03E-22 Body mass index
THCA cis rs2275426 1 rs4660910 chr1:46548402 GPBP1L1 chr1:46092978-46152302:- 0.13 3.41 0.000705 Body mass index
THCA cis rs2275426 1 rs4660910 chr1:46548402 MMACHC chr1:45965856-45976737:+ -0.21 -4.48 9.32E-6 Body mass index
THCA cis rs2275426 1 rs4660910 chr1:46548402 MUTYH chr1:45794915-45806142:- 0.28 7.49 3.29E-13 Body mass index
THCA cis rs10789491 1 rs4660956 chr1:47158486 CYP4B1 chr1:47264670-47285020:+ 0.23 3.54 0.000446 Response to hepatitis C treatment
THCA cis rs10789491 1 rs4660956 chr1:47158486 CYP4Z1 chr1:47533160-47583992:+ 0.28 4.06 5.63E-5 Response to hepatitis C treatment
THCA cis rs10789491 1 rs4660956 chr1:47158486 DMBX1 chr1:46972668-46979884:+ 0.23 3.9 0.000108 Response to hepatitis C treatment
THCA cis rs670523 1 rs4661151 chr1:155903408 FDPS chr1:155278539-155290457:+ -0.21 -4.26 2.41E-5 Crohn's disease;Inflammatory bowel disease
THCA cis rs670523 1 rs4661151 chr1:155903408 RIT1 chr1:155867601-155881177:- 0.17 3.89 0.000114 Crohn's disease;Inflammatory bowel disease
THCA cis rs670523 1 rs4661175 chr1:155931368 FDPS chr1:155278539-155290457:+ -0.21 -4.25 2.55E-5 Crohn's disease;Inflammatory bowel disease
THCA cis rs670523 1 rs4661175 chr1:155931368 RIT1 chr1:155867601-155881177:- 0.18 4.16 3.7E-5 Crohn's disease;Inflammatory bowel disease
THCA cis rs670523 1 rs4661175 chr1:155931368 SLC25A44 chr1:156163730-156182586:+ 0.2 3.78 0.000177 Crohn's disease;Inflammatory bowel disease
THCA cis rs4663866 1 rs4663300 chr2:239181491 LOC151174 chr2:239133754-239140318:- 0.48 5.25 2.24E-7 Irritable bowel syndrome
THCA cis rs4663866 1 rs4663865 chr2:239145960 LOC151174 chr2:239133754-239140318:- -0.51 -5.59 3.86E-8 Irritable bowel syndrome